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Chen, Changjun, Xiao, Yi, Huang, Yanzhao (2015) Improving the replica-exchange molecular-dynamics method for efficient sampling in the temperature space. Physical Review E, 91 (5) doi:10.1103/physreve.91.052708

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Reference TypeJournal (article/letter/editorial)
TitleImproving the replica-exchange molecular-dynamics method for efficient sampling in the temperature space
JournalPhysical Review E
AuthorsChen, ChangjunAuthor
Xiao, YiAuthor
Huang, YanzhaoAuthor
Year2015 (May 18)Volume91
Issue5
PublisherAmerican Physical Society (APS)
DOIdoi:10.1103/physreve.91.052708Search in ResearchGate
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Mindat Ref. ID14520265Long-form Identifiermindat:1:5:14520265:3
GUID0
Full ReferenceChen, Changjun, Xiao, Yi, Huang, Yanzhao (2015) Improving the replica-exchange molecular-dynamics method for efficient sampling in the temperature space. Physical Review E, 91 (5) doi:10.1103/physreve.91.052708
Plain TextChen, Changjun, Xiao, Yi, Huang, Yanzhao (2015) Improving the replica-exchange molecular-dynamics method for efficient sampling in the temperature space. Physical Review E, 91 (5) doi:10.1103/physreve.91.052708
In(2015, May) Physical Review E Vol. 91 (5) American Physical Society (APS)

See Also

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Chen, Changjun, Huang, Yanzhao (2016) Walking freely in the energy and temperature space by the modified replica exchange molecular dynamics method. Journal of Computational Chemistry, 37 (17). 1565-1575 doi:10.1002/jcc.24371
Chen, Changjun, Huang, Yanzhao, Xiao, Yi (2012) Free-energy calculations along a high-dimensional fragmented path with constrained dynamics. Physical Review E, 86 (3) doi:10.1103/physreve.86.031901
Chen, Changjun, Huang, Yanzhao, Jiang, Xuewei, Xiao, Yi (2013) Binding free-energy calculation of an ion-peptide complex by constrained dynamics. Physical Review E, 87 (6) doi:10.1103/physreve.87.062705
Jiang, Xuewei, Zhong, Anhua, Chen, Changjun, Huang, Yanzhao, Xiao, Yi (2012) Network approach to identify the folding transition states of peptides and proteins. Physical Review E, 86 (5) doi:10.1103/physreve.86.051901
Nadler, Walter, Hansmann, Ulrich H. E. (2007) Optimizing replica exchange moves for molecular dynamics. Physical Review E, 76 (5) doi:10.1103/physreve.76.057102
Hayashi, Takuya, Okamoto, Yuko (2019) Efficient simulation protocol for determining the density of states: Combination of replica-exchange Wang-Landau method and multicanonical replica-exchange method. Physical Review E, 100 (4) doi:10.1103/physreve.100.043304
Yamamoto, Ryoichi, Kob, Walter (2000) Replica-exchange molecular dynamics simulation for supercooled liquids. Physical Review E, 61 (5) 5473-5476 doi:10.1103/physreve.61.5473
Zhang, Ming, Chen, Changjun, He, Yi, Xiao, Yi (2005) Improvement on a simplified model for protein folding simulation. Physical Review E, 72 (5) doi:10.1103/physreve.72.051919
Kar, Parimal, Nadler, Walter, Hansmann, Ulrich H. E. (2009) Microcanonical replica exchange molecular dynamics simulation of proteins. Physical Review E, 80 (5) doi:10.1103/physreve.80.056703
Chen, Changjun, Huang, Yanzhao, Jiang, Xuewei, Xiao, Yi (2014) A fast tomographic method for searching the minimum free energy path. The Journal of Chemical Physics, 141 (15). 154109pp. doi:10.1063/1.4897983
Xiao, Yi, Huang, Yanzhao, Li, Mingfeng, Xu, Ruizhen, Xiao, Saifeng (2003) Nonlinear analysis of correlations in Alu repeat sequences in DNA. Physical Review E, 68 (6) doi:10.1103/physreve.68.061913
 
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