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Higo, Junichi, Nishimura, Yoshifumi, Nakamura, Haruki (2011) A Free-Energy Landscape for Coupled Folding and Binding of an Intrinsically Disordered Protein in Explicit Solvent from Detailed All-Atom Computations. Journal Of The American Chemical Society, 133 (27) 10448-10458 doi:10.1021/ja110338e

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Reference TypeJournal (article/letter/editorial)
TitleA Free-Energy Landscape for Coupled Folding and Binding of an Intrinsically Disordered Protein in Explicit Solvent from Detailed All-Atom Computations
JournalJournal Of The American Chemical Society
AuthorsHigo, JunichiAuthor
Nishimura, YoshifumiAuthor
Nakamura, HarukiAuthor
Year2011 (July 13)Volume133
Issue27
PublisherAmerican Chemical Society (ACS)
DOIdoi:10.1021/ja110338eSearch in ResearchGate
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Mindat Ref. ID1736654Long-form Identifiermindat:1:5:1736654:6
GUID0
Full ReferenceHigo, Junichi, Nishimura, Yoshifumi, Nakamura, Haruki (2011) A Free-Energy Landscape for Coupled Folding and Binding of an Intrinsically Disordered Protein in Explicit Solvent from Detailed All-Atom Computations. Journal Of The American Chemical Society, 133 (27) 10448-10458 doi:10.1021/ja110338e
Plain TextHigo, Junichi, Nishimura, Yoshifumi, Nakamura, Haruki (2011) A Free-Energy Landscape for Coupled Folding and Binding of an Intrinsically Disordered Protein in Explicit Solvent from Detailed All-Atom Computations. Journal Of The American Chemical Society, 133 (27) 10448-10458 doi:10.1021/ja110338e
In(2011, July) Journal Of The American Chemical Society Vol. 133 (27) American Chemical Society (ACS)

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Higo, Junichi, Umezawa, Koji, Nakamura, Haruki (2013) A virtual-system coupled multicanonical molecular dynamics simulation: Principles and applications to free-energy landscape of proteinā€“protein interaction with an all-atom model in explicit solvent. The Journal of Chemical Physics, 138 (18). 184106pp. doi:10.1063/1.4803468
Higo, Junichi, Dasgupta, Bhaskar, Mashimo, Tadaaki, Kasahara, Kota, Fukunishi, Yoshifumi, Nakamura, Haruki (2015) Virtual-system-coupled adaptive umbrella sampling to compute free-energy landscape for flexible molecular docking. Journal of Computational Chemistry, 36 (20). 1489-1501 doi:10.1002/jcc.23948
Robustelli, Paul, Piana, Stefano, Shaw, David E. (2020) Mechanism of Coupled Folding-upon-Binding of an Intrinsically Disordered Protein. Journal of the American Chemical Society, 142 (25) 11092-11101 doi:10.1021/jacs.0c03217
Ikebe, Jinzen, Kamiya, Narutoshi, Shindo, Heisaburo, Nakamura, Haruki, Higo, Junichi (2007) Conformational sampling of a 40-residue protein consisting of Ī± and Ī² secondary-structure elements in explicit solvent. Chemical Physics Letters, 443. 364-368 doi:10.1016/j.cplett.2007.06.102
Canon, Francis, Ballivian, Renaud, Chirot, Fabien, Antoine, Rodolphe, Sarni-Manchado, Pascale, Lemoine, JeĢroĢ‚me, Dugourd, Philippe (2011) Folding of a Salivary Intrinsically Disordered Protein upon Binding to Tannins. Journal Of The American Chemical Society, 133 (20) 7847-7852 doi:10.1021/ja200534f
Sharma, Shilpa; Saha, Arjun (2025) Exploring the binding free energy landscape of intrinsically disordered proteinā€“protein interactions: insights into the AF9ā€“BCOR complex implicated in leukemia. Physical Chemistry Chemical Physics, 27 (19). doi:10.1039/d5cp01009h
Drobnak, Igor, De Jonge, Natalie, Haesaerts, Sarah, Vesnaver, Gorazd, Loris, Remy, Lah, Jurij (2013) Energetic Basis of Uncoupling Folding from Binding for an Intrinsically Disordered Protein. Journal Of The American Chemical Society, 135 (4) 1288-1294 doi:10.1021/ja305081b
Rogers, Joseph M., Steward, Annette, Clarke, Jane (2013) Folding and Binding of an Intrinsically Disordered Protein: Fast, but Not ā€˜Diffusion-Limitedā€™. Journal Of The American Chemical Society, 135 (4) 1415-1422 doi:10.1021/ja309527h
Ono, Satoshi, Nakajima, Nobuyuki, Higo, Junichi, Nakamura, Haruki (1999) The multicanonical weighted histogram analysis method for the free-energy landscape along structural transition paths. Chemical Physics Letters, 312. 247-254 doi:10.1016/s0009-2614(99)00969-0
Fukunishi, Yoshifumi, Mitomo, Daisuke, Nakamura, Haruki (2009) Proteināˆ’Ligand Binding Free Energy Calculation by the Smooth Reaction Path Generation (SRPG) Method. Journal of Chemical Information and Modeling, 49 (8) 1944-1951 doi:10.1021/ci9002156
Umezawa, Koji, Morikawa, Ryota, Nakamura, Haruki, Higo, Junichi (2010) Solvent flow patterns fluctuating largely around a protein and correlation with solvent density fluctuations: A molecular dynamics study. The Journal of Chemical Physics, 132 (15). 155103pp. doi:10.1063/1.3378263
 
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