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Harrison, Paul M. (2025) Robust phylogenetic profile clustering for Saccharomyces cerevisiae proteins. PeerJ, 13. doi:10.7717/peerj.19370

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Reference TypeJournal (article/letter/editorial)
TitleRobust phylogenetic profile clustering for Saccharomyces cerevisiae proteins
JournalPeerJ
AuthorsHarrison, Paul M.Author
Year2025 (April 28)Volume13
PublisherPeerJ
DOIdoi:10.7717/peerj.19370Search in ResearchGate
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Mindat Ref. ID18377597Long-form Identifiermindat:1:5:18377597:3
GUID0
Full ReferenceHarrison, Paul M. (2025) Robust phylogenetic profile clustering for Saccharomyces cerevisiae proteins. PeerJ, 13. doi:10.7717/peerj.19370
Plain TextHarrison, Paul M. (2025) Robust phylogenetic profile clustering for Saccharomyces cerevisiae proteins. PeerJ, 13. doi:10.7717/peerj.19370
In(2025) PeerJ Vol. 13. PeerJ

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Isidoro-Ayza, Marcos, Klein, Bruce S. (2024) Pathogenic strategies of Pseudogymnoascus destructans during torpor and arousal of hibernating bats. Science, 385 (6705) 194-200 doi:10.1126/science.adn5606
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Kellis, Manolis, Birren, Bruce W., Lander, Eric S. (2004) Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature, 428 (6983). 617-624 doi:10.1038/nature02424
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Not Yet Imported: - book-chapter : 10.1007/978-1-61779-361-5_9

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Pellegrini, M., Marcotte, E. M., Thompson, M. J., Eisenberg, D., Yeates, T. O. (1999) Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles. Proceedings of the National Academy of Sciences, 96 (8) 4285-4288 doi:10.1073/pnas.96.8.4285
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Not Yet Imported: Molecular Biology and Evolution - journal-article : 10.1093/oxfordjournals.molbev.a040454

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Su, Wan-Chun, Harrison, Paul M. (2020) Deep conservation of prion-like composition in the eukaryotic prion-former Pub1/Tia1 family and its relatives. PeerJ, 8. doi:10.7717/peerj.9023
Not Yet Imported: - journal-article : 10.1093/genetics/iyad031

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Vakirlis (2024) Genome Biology and Evolution Ancestral sequence reconstruction as a tool to detect and study de novo gene emergence 16, 598
Wolfe, Kenneth H., Shields, Denis C. (1997) Molecular evidence for an ancient duplication of the entire yeast genome. Nature, 387 (6634). 708-713 doi:10.1038/42711

See Also

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Luo, Jiayi, Harrison, Paul M. (2022) Evolution of sequence traits of prion-like proteins linked to amyotrophic lateral sclerosis (ALS) PeerJ, 10. doi:10.7717/peerj.14417
Li, Zhaoyi, Zhang, Feng (2025) Comparative mitogenomics of Cheiracanthium species (Araneae: Cheiracanthiidae) with phylogenetic implication and evolutionary insights. PeerJ, 13. doi:10.7717/peerj.18314
Fasanello, Vincent J., Liu, Ping, Botero, Carlos A., Fay, Justin C. (2020) High-throughput analysis of adaptation using barcoded strains of Saccharomyces cerevisiae. PeerJ, 8. doi:10.7717/peerj.10118
Harrison, Paul M. (2021) fLPS 2.0: rapid annotation of compositionally-biased regions in biological sequences. PeerJ, 9. doi:10.7717/peerj.12363
Moore, Ryan M., Harrison, Amelia O., McAllister, Sean M., Polson, Shawn W., Wommack, K. Eric (2020) Iroki: automatic customization and visualization of phylogenetic trees. PeerJ, 8. doi:10.7717/peerj.8584
Harrison, Paul M. (2020) Variable absorption of mutational trends by prion-forming domains during Saccharomycetes evolution. PeerJ, 8. doi:10.7717/peerj.9669
Yue, Yan; Qian, Jing; Gui, Dandan; Lu, Bin (2025) Circular RNAs in endometriosis analyzed through RNA sequencing and bioinformatics for expression profile. PeerJ, 13. doi:10.7717/peerj.19298
Foerster, Stênio Í. A. (2025) Body size prediction in scorpions: a phylogenetic comparative examination of linear measurements of individual body parts. PeerJ, 13. doi:10.7717/peerj.18621
Matsui, Kumiko, Tsuihiji, Takanobu (2019) The phylogeny of desmostylians revisited: proposal of new clades based on robust phylogenetic hypotheses. PeerJ, 7. doi:10.7717/peerj.7430
Zhao, Zhou, Chen, Xiufeng, Pang, Huayang, Shi, Yan, Sun, Hao (2025) Safety profile of EZH2 inhibitors for cancer: a systematic review and meta-analysis. PeerJ, 13. doi:10.7717/peerj.18871
Mahé, Frédéric, Rognes, Torbjørn, Quince, Christopher, de Vargas, Colomban, Dunthorn, Micah (2014) Swarm: robust and fast clustering method for amplicon-based studies. PeerJ, 2. doi:10.7717/peerj.593
 
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