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Joung, InSuk, Kim, Jong Yun, Gross, Steven P., Joo, Keehyoung, Lee, Jooyoung (2018) Conformational Space Annealing explained: A general optimization algorithm, with diverse applications. Computer Physics Communications, 223. 28-33 doi:10.1016/j.cpc.2017.09.028

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Reference TypeJournal (article/letter/editorial)
TitleConformational Space Annealing explained: A general optimization algorithm, with diverse applications
JournalComputer Physics Communications
AuthorsJoung, InSukAuthor
Kim, Jong YunAuthor
Gross, Steven P.Author
Joo, KeehyoungAuthor
Lee, JooyoungAuthor
Year2018 (February)Volume223
PublisherElsevier BV
DOIdoi:10.1016/j.cpc.2017.09.028Search in ResearchGate
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Mindat Ref. ID6602014Long-form Identifiermindat:1:5:6602014:7
GUID0
Full ReferenceJoung, InSuk, Kim, Jong Yun, Gross, Steven P., Joo, Keehyoung, Lee, Jooyoung (2018) Conformational Space Annealing explained: A general optimization algorithm, with diverse applications. Computer Physics Communications, 223. 28-33 doi:10.1016/j.cpc.2017.09.028
Plain TextJoung, InSuk, Kim, Jong Yun, Gross, Steven P., Joo, Keehyoung, Lee, Jooyoung (2018) Conformational Space Annealing explained: A general optimization algorithm, with diverse applications. Computer Physics Communications, 223. 28-33 doi:10.1016/j.cpc.2017.09.028
In(n.d.) Computer Physics Communications Vol. 223. Elsevier BV

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Park, Jimin, Joung, InSuk, Joo, Keehyoung, Lee, Jooyoung (2023) Application of conformational space annealing to the protein structure modeling using cryo‐EM maps. Journal of Computational Chemistry, 44 (30) 2332-2346 doi:10.1002/jcc.27200
Lee, Juyong, Gross, Steven P., Lee, Jooyoung (2012) Modularity optimization by conformational space annealing. Physical Review E, 85 (5) doi:10.1103/physreve.85.056702
Lee, Jinwoo, Joo, Keehyoung, Kim, Seung-Yeon, Lee, Jooyoung (2008) Re-examination of structure optimization of off-lattice protein AB models by conformational space annealing. Journal of Computational Chemistry, 29 (14). 2479-2484 doi:10.1002/jcc.20995
Heo, Seungryong, Lee, Juyong, Joo, Keehyoung, Shin, Hang-Cheol, Lee, Jooyoung (2017) Protein Loop Structure Prediction Using Conformational Space Annealing. Journal of Chemical Information and Modeling, 57 (5) 1068-1078 doi:10.1021/acs.jcim.6b00742
Lee, In-Ho, Oh, Young Jun, Kim, Sunghyun, Lee, Jooyoung, Chang, K.J. (2016) Ab initio materials design using conformational space annealing and its application to searching for direct band gap silicon crystals. Computer Physics Communications, 203. 110-121 doi:10.1016/j.cpc.2016.02.011
Lee, Juyong, Lee, In-Ho, Joung, InSuk, Lee, Jooyoung, Brooks, Bernard R. (2017) Finding multiple reaction pathways via global optimization of action. Nature Communications, 8. doi:10.1038/ncomms15443
Keehyoung, Joo, Julian, Lee, Seung-Yeon, Kim, Ilsoo, Kim, Sung Jong, Lee, Jooyoung, Lee (2004) Profile-based Nearest Neighbor Method for Pattern Recognition. Journal of the Korean Physical Society, 44 (3). 599pp. doi:10.3938/jkps.44.599
Seo, Joo-Hyun, Park, Jihyang, Kim, Eun-Mi, Kim, Juhan, Joo, Keehyoung, Lee, Jooyoung, Kim, Byung-Gee (2014) Subgrouping Automata: Automatic sequence subgrouping using phylogenetic tree-based optimum subgrouping algorithm. Computational Biology and Chemistry, 48. 64-70 doi:10.1016/j.compbiolchem.2013.11.004
Kim, Seung-Yeon, Lee, Sung Jong, Lee, Jooyoung (2003) Conformational space annealing and an off-lattice frustrated model protein. The Journal of Chemical Physics, 119 (19). 10274-10279 doi:10.1063/1.1616917
Kim, Seung-Yeon, Lee, Sang Bub, Lee, Jooyoung (2005) Structure optimization by conformational space annealing in an off-lattice protein model. Physical Review E, 72 (1) doi:10.1103/physreve.72.011916
Li, Xuesong, Ma, Lin (2012) Minimizing binary functions with simulated annealing algorithm with applications to binary tomography. Computer Physics Communications, 183. 309-315 doi:10.1016/j.cpc.2011.10.011
 
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