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Sripakdeevong, Parin, Cevec, Mirko, Chang, Andrew T, Erat, Michèle C, Ziegeler, Melanie, Zhao, Qin, Fox, George E, Gao, Xiaolian, Kennedy, Scott D, Kierzek, Ryszard, Nikonowicz, Edward P, Schwalbe, Harald, Sigel, Roland K O, Turner, Douglas H, Das, Rhiju (2014) Structure determination of noncanonical RNA motifs guided by 1H NMR chemical shifts. Nature Methods, 11 (4). 413-416 doi:10.1038/nmeth.2876

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Reference TypeJournal (article/letter/editorial)
TitleStructure determination of noncanonical RNA motifs guided by 1H NMR chemical shifts
JournalNature Methods
AuthorsSripakdeevong, ParinAuthor
Cevec, MirkoAuthor
Chang, Andrew TAuthor
Erat, Michèle CAuthor
Ziegeler, MelanieAuthor
Zhao, QinAuthor
Fox, George EAuthor
Gao, XiaolianAuthor
Kennedy, Scott DAuthor
Kierzek, RyszardAuthor
Nikonowicz, Edward PAuthor
Schwalbe, HaraldAuthor
Sigel, Roland K OAuthor
Turner, Douglas HAuthor
Das, RhijuAuthor
Year2014 (April)Volume11
Issue4
PublisherSpringer Science and Business Media LLC
DOIdoi:10.1038/nmeth.2876Search in ResearchGate
Generate Citation Formats
Mindat Ref. ID7942755Long-form Identifiermindat:1:5:7942755:3
GUID0
Full ReferenceSripakdeevong, Parin, Cevec, Mirko, Chang, Andrew T, Erat, Michèle C, Ziegeler, Melanie, Zhao, Qin, Fox, George E, Gao, Xiaolian, Kennedy, Scott D, Kierzek, Ryszard, Nikonowicz, Edward P, Schwalbe, Harald, Sigel, Roland K O, Turner, Douglas H, Das, Rhiju (2014) Structure determination of noncanonical RNA motifs guided by 1H NMR chemical shifts. Nature Methods, 11 (4). 413-416 doi:10.1038/nmeth.2876
Plain TextSripakdeevong, Parin, Cevec, Mirko, Chang, Andrew T, Erat, Michèle C, Ziegeler, Melanie, Zhao, Qin, Fox, George E, Gao, Xiaolian, Kennedy, Scott D, Kierzek, Ryszard, Nikonowicz, Edward P, Schwalbe, Harald, Sigel, Roland K O, Turner, Douglas H, Das, Rhiju (2014) Structure determination of noncanonical RNA motifs guided by 1H NMR chemical shifts. Nature Methods, 11 (4). 413-416 doi:10.1038/nmeth.2876
In(2014, April) Nature Methods Vol. 11 (4) Springer Science and Business Media LLC

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Chou, Fang-Chieh, Sripakdeevong, Parin, Dibrov, Sergey M, Hermann, Thomas, Das, Rhiju (2013) Correcting pervasive errors in RNA crystallography through enumerative structure prediction. Nature Methods, 10 (1). 74-76 doi:10.1038/nmeth.2262
Das, Rhiju, Karanicolas, John, Baker, David (2010) Atomic accuracy in predicting and designing noncanonical RNA structure. Nature Methods, 7 (4). 291-294 doi:10.1038/nmeth.1433
Kierzek, Elzbieta, Zhang, Xiaoju, Watson, Richard M., Kennedy, Scott D., Szabat, Marta, Kierzek, Ryszard, Mathews, David H. (2022) Secondary structure prediction for RNA sequences including N6-methyladenosine. Nature Communications, 13 (1) doi:10.1038/s41467-022-28817-4
Condon, David E., Yildirim, Ilyas, Kennedy, Scott D., Mort, Brendan C., Kierzek, Ryszard, Turner, Douglas H. (2014) Optimization of an AMBER Force Field for the Artificial Nucleic Acid, LNA, and Benchmarking with NMR of L(CAAU). The Journal of Physical Chemistry B, 118 (5). 1216-1228 doi:10.1021/jp408909t
Chen, Gang, Kierzek, Ryszard, Yildirim, Ilyas, Krugh, Thomas R., Turner, Douglas H., Kennedy, Scott D. (2007) Stacking Effects on Local Structure in RNA:  Changes in the Structure of Tandem GA Pairs when Flanking GC Pairs Are Replaced by isoG−isoC Pairs†. The Journal of Physical Chemistry B, 111 (24). 6718-6727 doi:10.1021/jp068732m
Chen, Xiaoying, Kierzek, Ryszard, Turner, Douglas H. (2001) Stability and Structure of RNA Duplexes Containing Isoguanosine and Isocytidine. Journal Of The American Chemical Society, 123 (7) 1267-1274 doi:10.1021/ja002623i
Das, Rhiju (2021) RNA structure: a renaissance begins?. Nature Methods, 18 (5) 439 doi:10.1038/s41592-021-01132-4
Erat, Michèle C., Sigel, Roland K. O. (2007) Determination of the Intrinsic Affinities of Multiple Site-Specific Mg2+Ions Coordinated to Domain 6 of a Group II Intron Ribozyme†. Inorganic Chemistry, 46 (26) 11224-11234 doi:10.1021/ic701627t
Nikonowicz, Edward P., Pardi, Arthur (1992) Three-dimensional heteronuclear NMR studies of RNA. Nature, 355 (6356). 184-186 doi:10.1038/355184a0
Watkins, Andrew M., Geniesse, Caleb, Kladwang, Wipapat, Zakrevsky, Paul, Jaeger, Luc, Das, Rhiju (2018) Blind prediction of noncanonical RNA structure at atomic accuracy. Science Advances, 4 (5). doi:10.1126/sciadv.aar5316
(2015) RNA structure by solid-state NMR. Nature Methods, 12 (7). 601 doi:10.1038/nmeth.3460
 
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